PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g010770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 313aa    MW: 34924.5 Da    PI: 5.2812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g010770.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.1e-154695255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      r +h+e E+rRR +iN++f++Lr+l+P++    ++K + a+   ++++YI+ Lq
  Sopen03g010770.1 46 RSKHSETEQRRRIKINERFQTLRDLIPQN----DQKRDRASFMLEVIQYIQFLQ 95
                      899*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1834494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-2144115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1745121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-144699No hitNo description
PfamPF000101.1E-124695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-1150100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVRTVKNHHE EDEEDDEEFS SRTPDGSSQK GKLEGKSNDG KVSAHRSKHS ETEQRRRIKI  60
NERFQTLRDL IPQNDQKRDR ASFMLEVIQY IQFLQEKLQM YEGTNQGWSA EPSKLLPWRS  120
TPGPVEGSVE HSQIIRNGST HEDDIVINPT LVASVQSFVE PNLTAAALYR ATHGSHMAAD  180
EAIAFNMPLQ PNLFENASVE PSPDAEHPSQ TQSLCWPDKR DTIESEVLSY GRNDQEEVKF  240
DGEAVGRSHA YSQRLLNIIN QTLASVGVDP SLADVRVQLD ISKKTSSGAT ATRLSSGENY  300
GGAPKRLRTE GSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070909.10.0PREDICTED: transcription factor BIM2
TrEMBLA0A0V0I1690.0A0A0V0I169_SOLCH; Putative transcription factor BIM2-like
STRINGSolyc03g046570.2.11e-138(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89471821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-46BES1-interacting Myc-like protein 2